FastQCFastQC Report
Thu 15 Oct 2015
C8364ACXX_l03n01_7765.34100000035c6f.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC8364ACXX_l03n01_7765.34100000035c6f.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14427885
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTTGTG1347600.059.8876761
TTTGTGT1426150.056.655822
ACTTTGT465750.055.320761
TTGTGTT1578200.052.6827133
TGTGTTT1693750.049.3986934
GTGTTTG1901400.044.1308065
TAACTTT261500.040.684141
AACTTTG264700.040.4018062
TTGAGTC173750.032.5611884
TTTGAGG595050.032.070378
GTTTGAG1465400.032.0092967
TGTTTGA2665500.031.4498656
TTGAGGC82100.030.5874969
TTTGAGT528000.029.1971763
TTGAGGG381850.028.6680349
GTTTGAC509300.028.0372587
TTGACGC30000.027.2168969
TTTGACC131650.026.4310558
TTTGACG173300.026.2146938
TGAGTGG76150.025.8707835
Produced by FastQC (version 0.11.2)