C7KY3ACXX_l06n01_glk1_chx_mn_md_04.3510000004082d.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	C7KY3ACXX_l06n01_glk1_chx_mn_md_04.3510000004082d.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	23255172
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATGCC	1137962	4.893371676631761	TruSeq Adapter, Index 6 (100% over 51bp)
ACTTCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAA	286042	1.23001455332173	No Hit
TATTCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATC	220281	0.9472344474596877	No Hit
TCTTCAGTTTAAAGATTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATC	44608	0.19181969499086055	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ACACGTC	121870	43.90852	13
CGTCTGA	121605	43.861145	16
CACACGT	122210	43.820866	12
ACGTCTG	121780	43.8092	15
GCACACG	122975	43.5971	11
TCGGAAG	123980	43.532078	3
GTATGCC	121240	43.50286	45
CGTATGC	121720	43.325768	44
AGTCACG	122035	43.16641	28
CGCCAAT	121460	43.14476	33
AGCACAC	124515	43.113907	10
TCTGAAC	123765	43.057487	18
TAAGCCG	30140	43.03775	16
TATCTCG	122760	42.93471	39
CTCGTAT	122830	42.932404	42
TCGTATG	123150	42.86286	43
GAGCACA	125350	42.84286	9
TCTCGTA	123065	42.830124	41
CGGAAGA	126005	42.77086	4
GATCGGA	126565	42.70879	1