C7KGBACXX_l04n01_18_tga1_wt.3510000003d27b.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	C7KGBACXX_l04n01_18_tga1_wt.3510000003d27b.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	14661084
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACTTGAATCTCGTATGCC	247027	1.6849163404288523	TruSeq Adapter, Index 8 (100% over 51bp)
GGGATCTGTACGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGGACG	48653	0.33185131467768686	No Hit
GTCGGGATCTGTACGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGG	36692	0.25026798836975495	No Hit
CGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGGACGTCATCAAGGA	28924	0.19728418444366053	No Hit
CGGGATCTGTACGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGGAC	25506	0.1739707650539346	No Hit
GCTGACTCTAGCAGATCTATCGATTCTAGCATGACTGGTGGACAGCAAATG	23253	0.15860355209751203	No Hit
ATCGATTCTAGCATGACTGGTGGACAGCAAATGGGTCGGGATCTGTACGAC	22700	0.15483166183346334	No Hit
CCTCGATCTCGAACTCGTGGCCGTTCACGGAGCCCTCCATGCGCACCTTGA	16435	0.11209948732303833	No Hit
CTTGGCGGTCTGGGTGCCCTCGTAGGGGCGGCCCTCGCCCTCGCCCTCGAT	14823	0.10110439309944613	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATGCC	28540	42.972404	45
CGTATGC	28655	42.78293	44
CTCGTAT	28900	42.171116	42
TCGTATG	29135	41.93136	43
GCACACG	31200	41.21476	11
ACGTCTG	31295	41.17789	15
TCTCGTA	29965	40.68008	41
GTCACAC	30120	40.585823	29
CACACGT	31730	40.51924	12
CACGTCT	31905	40.509525	14
ACACGTC	31755	40.50248	13
CAGTCAC	30285	40.461567	27
AGCACAC	31780	40.424965	10
CGTCTGA	32020	40.259594	16
CCAGTCA	30485	40.18135	26
AGTCACA	30500	39.888634	28
CTGAACT	32305	39.790257	19
TCCAGTC	32230	39.449486	25
GAGCACA	32600	39.441307	9
AATCTCG	30780	39.295807	39