C7KGBACXX_l04n01_16_tga1_wt.3510000003d1bf.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	C7KGBACXX_l04n01_16_tga1_wt.3510000003d1bf.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	14460970
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
GGGATCTGTACGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGGACG	70558	0.48792024324785954	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATGCC	68516	0.47379947541554956	TruSeq Adapter, Index 6 (100% over 51bp)
GTCGGGATCTGTACGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGG	54749	0.378598392777248	No Hit
CGGGATCTGTACGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGGAC	37502	0.2593325344012193	No Hit
CGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGGACGTCATCAAGGA	36150	0.24998323072380346	No Hit
GCTGACTCTAGCAGATCTATCGATTCTAGCATGACTGGTGGACAGCAAATG	33793	0.23368418577730263	No Hit
CTTGGCGGTCTGGGTGCCCTCGTAGGGGCGGCCCTCGCCCTCGCCCTCGAT	27148	0.18773291141603918	No Hit
ATCGATTCTAGCATGACTGGTGGACAGCAAATGGGTCGGGATCTGTACGAC	23909	0.16533469054980407	No Hit
CCTCGATCTCGAACTCGTGGCCGTTCACGGAGCCCTCCATGCGCACCTTGA	21363	0.14772867933478873	No Hit
GCCAAATGTTTGAACGATCGGGAATTGGATCCGGTACCGAGCTCGAATTCT	19792	0.13686495442560215	No Hit
CCGTGACCCAGGACTCCTCCCTGCAGGACGGCGAGTTCATCTACAAGGTGA	19075	0.13190678080377732	No Hit
CAGCAAATGGGTCGGGATCTGTACGACGATGACGATAAGGATCCGATGGCC	18141	0.12544801628106553	No Hit
CGCGTGATGAACTTCGAGGACGGCGGCGTGGTGACCGTGACCCAGGACTCC	17765	0.12284791407492028	No Hit
CGGGGATGTCGGCGGGGTGCTTCACGTAGGCCTTGGAGCCGTACTGGAACT	17735	0.12264045911166402	No Hit
CGGGAATTGGATCCGGTACCGAGCTCGAATTCTTAGGCGCCGGTGGAGTGG	17382	0.12019940571068194	No Hit
CTCGAAGTTCATCACGCGCTCCCACTTGAAGCCCTCGGGGAAGGACAGCTT	16855	0.11655511352281347	No Hit
CCGACATCAAGCTGGACATCACCTCCCACAACGAGGACTACACCATCGTGG	16842	0.11646521637206908	No Hit
TCGGGATCTGTACGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGGA	15889	0.10987506370596163	No Hit
GGCGTGGTGACCGTGACCCAGGACTCCTCCCTGCAGGACGGCGAGTTCATC	15524	0.10735102831967702	No Hit
GGCGGTCTGGGTGCCCTCGTAGGGGCGGCCCTCGCCCTCGCCCTCGATCTC	14666	0.10141781637054775	No Hit
AGCAGATCTATCGATTCTAGCATGACTGGTGGACAGCAAATGGGTCGGGAT	14538	0.10053267519398769	No Hit
CTGGAACTGAGGGGACAGGATGTCCCAGGCGAAGGGCAGGGGGCCGCCCTT	14529	0.10047043870501081	No Hit
GGACAGCAAATGGGTCGGGATCTGTACGACGATGACGATAAGGATCCGATG	14508	0.10032522023073141	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCACACG	9185	39.41424	11
CGTATGC	9065	38.692837	44
ACGTCTG	9375	38.42544	15
GTATGCC	9120	38.33694	45
TCACGCC	9145	38.162556	30
GTCACGC	9160	38.02597	29
CACGCCA	9200	37.5678	31
AGTCACG	9285	37.4175	28
AGCACAC	9670	37.36671	10
TCGTATG	9395	37.3577	43
ACACGTC	9665	37.34142	13
CACACGT	9780	37.085487	12
CTCGTAT	9430	37.052032	42
TATCTCG	9465	36.772526	39
CACGTCT	9845	36.75011	14
CGTCTGA	9990	36.08256	16
ACGCCAA	9705	35.473846	32
GAGCACA	10250	35.316933	9
GCCAATA	9740	35.298943	34
CGCCAAT	9890	35.036705	33

Summary

Basic Statistics

Per base sequence quality

Per tile sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content