C7KGBACXX_l04n01_12_tga1_wt.3510000003d03a.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	C7KGBACXX_l04n01_12_tga1_wt.3510000003d03a.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	17171161
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGATCTGTACGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGGACG	64799	0.3773711049590648	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATGCC	61380	0.35745981299691965	TruSeq Adapter, Index 2 (100% over 51bp)
GTCGGGATCTGTACGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGG	49934	0.2908015363667023	No Hit
GCTGACTCTAGCAGATCTATCGATTCTAGCATGACTGGTGGACAGCAAATG	36953	0.21520385255254437	No Hit
CGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGGACGTCATCAAGGA	36282	0.21129613775096512	No Hit
CGGGATCTGTACGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGGAC	35071	0.20424361521041004	No Hit
CTTGGCGGTCTGGGTGCCCTCGTAGGGGCGGCCCTCGCCCTCGCCCTCGAT	25229	0.14692658230855793	No Hit
CCTCGATCTCGAACTCGTGGCCGTTCACGGAGCCCTCCATGCGCACCTTGA	24476	0.1425413226280972	No Hit
ATCGATTCTAGCATGACTGGTGGACAGCAAATGGGTCGGGATCTGTACGAC	22630	0.13179073913522796	No Hit
CGGGGATGTCGGCGGGGTGCTTCACGTAGGCCTTGGAGCCGTACTGGAACT	21202	0.12347446978104742	No Hit
GCCAAATGTTTGAACGATCGGGAATTGGATCCGGTACCGAGCTCGAATTCT	20943	0.12196612680994605	No Hit
CGGGAATTGGATCCGGTACCGAGCTCGAATTCTTAGGCGCCGGTGGAGTGG	20134	0.11725473891951745	No Hit
CCGTGACCCAGGACTCCTCCCTGCAGGACGGCGAGTTCATCTACAAGGTGA	19368	0.11279377090459987	No Hit
CCGACATCAAGCTGGACATCACCTCCCACAACGAGGACTACACCATCGTGG	19170	0.11164067473364207	No Hit
CAGCAAATGGGTCGGGATCTGTACGACGATGACGATAAGGATCCGATGGCC	19041	0.11088941510710895	No Hit
CGCGTGATGAACTTCGAGGACGGCGGCGTGGTGACCGTGACCCAGGACTCC	18901	0.11007409458218928	No Hit
CTCGAAGTTCATCACGCGCTCCCACTTGAAGCCCTCGGGGAAGGACAGCTT	18842	0.109730495218116	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCACACG	8040	39.066143	11
CGTATGC	8020	37.75888	44
GTATGCC	8025	37.653	45
AGCACAC	8650	36.414066	10
ACGTCTG	8695	36.20374	15
CACACGT	8810	35.779533	12
ACACGTC	8875	35.316006	13
CACGTCT	9045	34.87613	14
TATCTCG	8680	34.81046	39
CTCGTAT	8760	34.723297	42
TCGTATG	8750	34.685844	43
CGATGTA	8805	34.166245	34
CGTCTGA	9475	33.294624	16
GAGCACA	9630	32.801067	9
AGTCACC	9385	32.58229	28
CAGTCAC	9380	32.57548	27
CCGATGT	9435	32.433567	33
AGAGCAC	9825	32.19585	8
TCTCGTA	9605	31.622131	41
ACCGATG	10085	30.254526	32