C7KGBACXX_l04n01_112_tga1_wt.3510000003d3a1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	C7KGBACXX_l04n01_112_tga1_wt.3510000003d3a1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	14058847
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATGCC	248803	1.769725497403877	TruSeq Adapter, Index 12 (100% over 51bp)
GGGATCTGTACGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGGACG	40322	0.2868087262063525	No Hit
GTCGGGATCTGTACGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGG	27839	0.19801766105001353	No Hit
CGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGGACGTCATCAAGGA	24970	0.17761058214802394	No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	24927	0.17730472491805338	No Hit
CGGGATCTGTACGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGGAC	20825	0.1481273677706287	No Hit
ATCGATTCTAGCATGACTGGTGGACAGCAAATGGGTCGGGATCTGTACGAC	15537	0.11051404144308563	No Hit
GCTGACTCTAGCAGATCTATCGATTCTAGCATGACTGGTGGACAGCAAATG	15475	0.11007303799522108	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	14068	0.10006510491223071	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATGCC	28550	42.46124	45
CGTATGC	28970	41.821007	44
CTCGTAT	29095	41.502285	42
TCGTATG	29320	41.268063	43
GCACACG	30955	40.449795	11
TCTCGTA	30170	40.031242	41
ACGTCTG	31315	39.929005	15
CAGTCAC	30565	39.831993	27
CACGTCT	31510	39.702194	14
CACACGT	31535	39.698696	12
CCAGTCA	30665	39.636063	26
AGCACAC	31520	39.616528	10
ACACGTC	31535	39.59224	13
AGTCACC	30575	39.51031	28
CGTCTGA	31860	39.274227	16
TGTAATC	30920	39.0398	36
TCCAGTC	31945	38.85676	25
GTAATCT	31100	38.741497	37
CTGAACT	32255	38.72869	19
ATCTCGT	31165	38.65932	40