C7KCWACXX_l02n01_hho5_pchx_9.35100000038387.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	C7KCWACXX_l02n01_hho5_pchx_9.35100000038387.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	17043017
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGATCAGATCTCGTATGCC	383428	2.2497659892024986	TruSeq Adapter, Index 9 (100% over 51bp)
GGGATCTGTACGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGGACG	103448	0.6069817333398189	No Hit
GTCGGGATCTGTACGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGG	85068	0.49913697791887435	No Hit
CGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGGACGTCATCAAGGA	39649	0.23264073491213438	No Hit
CGGGATCTGTACGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGGAC	39387	0.23110344840939842	No Hit
CTTGGCGGTCTGGGTGCCCTCGTAGGGGCGGCCCTCGCCCTCGCCCTCGAT	38393	0.22527114770817866	No Hit
GCTGACTCTAGCAGATCTATCGATTCTAGCATGACTGGTGGACAGCAAATG	37824	0.2219325369446032	No Hit
CAGCAAATGGGTCGGGATCTGTACGACGATGACGATAAGGATCCGATGGCC	26428	0.1550664415813233	No Hit
AGCAAATGGGTCGGGATCTGTACGACGATGACGATAAGGATCCGATGGCCT	23990	0.14076146259784872	No Hit
GGACAGCAAATGGGTCGGGATCTGTACGACGATGACGATAAGGATCCGATG	22279	0.1307221602841797	No Hit
ATCGATTCTAGCATGACTGGTGGACAGCAAATGGGTCGGGATCTGTACGAC	20175	0.11837692821640676	No Hit
CGGGGATGTCGGCGGGGTGCTTCACGTAGGCCTTGGAGCCGTACTGGAACT	19767	0.11598298587626828	No Hit
GTCACCTTCAGCTTGGCGGTCTGGGTGCCCTCGTAGGGGCGGCCCTCGCCC	19238	0.11287907534211813	No Hit
CCTCGATCTCGAACTCGTGGCCGTTCACGGAGCCCTCCATGCGCACCTTGA	18255	0.10711131720399034	No Hit
GGCGGTCTGGGTGCCCTCGTAGGGGCGGCCCTCGCCCTCGCCCTCGATCTC	17723	0.1039898041526333	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCACACG	43400	43.8568	11
AGCACAC	43840	43.334522	10
GTATGCC	43220	43.30889	45
CGTATGC	43325	43.24054	44
ACGTCTG	44285	43.037758	15
GTCACGA	43430	42.900593	29
AGTCACG	43600	42.860695	28
CACACGT	44470	42.83697	12
ACACGTC	44465	42.831665	13
TCGTATG	43875	42.750153	43
CTCGTAT	43835	42.686504	42
CACGTCT	44810	42.533524	14
GAGCACA	44935	42.36865	9
CGTCTGA	44900	42.368214	16
AGAGCAC	45210	42.15074	8
TCTCGTA	44630	41.962032	41
CAGTCAC	44595	41.954845	27
CTGAACT	45340	41.837955	19
TCACGAT	44635	41.77585	30
CCAGTCA	45030	41.639484	26