FastQCFastQC Report
Thu 15 Oct 2015
C68Y0ACXX_l08n02_52150223-1.3420000003573b.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC68Y0ACXX_l08n02_52150223-1.3420000003573b.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3271564
Sequences flagged as poor quality0
Sequence length101
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGGA23200.080.621082
GAGCGGC15750.077.365539
GATCGGG25900.073.88431
AGAGCGG19700.066.431048
AAGCGGC7700.064.6537259
TCGGGAG23300.064.363333
CGGAAAG13450.062.4508485
ATCCGGA5200.062.0791782
GAGAGCG21750.061.9156657
CGGGAGA25800.061.2508134
GTTCGGA4500.061.186542
GATCCGG5650.060.510531
GGTTCGG5600.057.6590961
TCGGGAA10050.055.7215543
TCGGAAA10650.051.688714
TCCGGAG4800.051.412583
GGATCGG9250.051.334011
TCGGAGA7200.050.7511144
AAAGCGG11050.050.205568
CGGGAAA14850.047.9349334
Produced by FastQC (version 0.11.2)