FastQCFastQC Report
Thu 15 Oct 2015
C68Y0ACXX_l08n02_35010-1.342000000357e8.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC68Y0ACXX_l08n02_35010-1.342000000357e8.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7011968
Sequences flagged as poor quality0
Sequence length101
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGCGGC14550.051.1648259
AGAGCGG15550.049.0945668
CGGAAAG12100.047.071275
CGGGAGA20100.046.9912574
GATCGGG28300.046.47751
GAGAGCG18350.043.155587
GGTCCGG4300.040.858531
AAGCGGC7850.040.470639
ATCGGGA30300.039.6406142
TTGTGTT558700.039.5716131
GGTTCGG8050.038.341311
AGCGGCG13350.036.0520910-11
TCGGGAA11100.035.4922643
GTTCGGA6500.035.058262
TGTGTTT998250.035.0477181
GGCGCCG13050.034.94392856-57
GATCCGG5700.034.1553271
CGCCGTA10850.033.92532358-59
TCGGGAG28950.032.791413
CGCCGGA7750.032.7871858-59
Produced by FastQC (version 0.11.2)