FastQCFastQC Report
Thu 15 Oct 2015
C68Y0ACXX_l08n02_35008-2.342000000358b0.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC68Y0ACXX_l08n02_35008-2.342000000358b0.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5937612
Sequences flagged as poor quality0
Sequence length101
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGGA35000.079.480792
GAGCGGC25100.078.758529
GATCGGG38500.073.873171
AGAGCGG30250.068.95688
AAGCGGC10750.063.061289
GAGAGCG35900.062.990847
GATCCGG9050.062.4336971
TCGGGAG40700.061.451873
GGTTCGG10750.061.394151
GTTCGGA8750.061.3062
TCGGAGA12100.061.1837584
CGGGAGA44600.059.6932144
GGATCGG17050.059.3165471
TTCGGAA9850.057.33633
TTCGGAG8950.054.6176643
TCGGAAA19900.053.180054
TCGGGAA14750.052.446263
CGGAAAG28100.050.8343285
ATCGGAG9900.050.814733
CCGGAAA11650.049.6970754
Produced by FastQC (version 0.11.2)