FastQCFastQC Report
Thu 15 Oct 2015
C68Y0ACXX_l08n02_34274-2.3420000003583a.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC68Y0ACXX_l08n02_34274-2.3420000003583a.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4679685
Sequences flagged as poor quality0
Sequence length101
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGGA8850.058.999012
GAGCGGC5300.049.1937839
CGGGAGA8600.048.004414
CGGTGCG502.8366081E-547.4765321
AGAGCGG5700.047.405938
GGTCCGG1750.043.407121
CGAACCG459.651548E-442.2013661
GAGAGCG9950.041.4513057
CGACGGG1051.033186E-940.694171
CGAGGCG1550.039.819031
GATCGGG16600.036.322411
GGTACGG1451.6370905E-1136.016681
CGGAAAG5000.035.1149525
AAGCGGC2800.033.8606539
CGGGGCC2550.033.512851
AACGCGG851.6388014E-533.512851
ATTCGGA2200.032.3641242
GGACCGG2250.031.6510241
CGGACCC902.4227025E-531.6510241
GAACCGG2400.031.6510221
Produced by FastQC (version 0.11.2)