C68Y0ACXX_l08n01_35008-1.341000000357b4.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	C68Y0ACXX_l08n01_35008-1.341000000357b4.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2463384
Sequences flagged as poor quality	0
Sequence length	101
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGCTCATTATCTCGTAT	34844	1.4144769958723447	TruSeq Adapter, Index 2 (97% over 37bp)
GTGTTTGACCCCCGAAACCAGACGAGCTACCTAAGAACAGCTAAAAGAGC	5140	0.20865606011892585	No Hit
GTGTTTGAGAGAGTAAAAAATTTAACACCCATAGTAGGCCTAAAAGCAGC	4203	0.1706189534396586	No Hit
TGTGTTTGACCCCCGAAACCAGACGAGCTACCTAAGAACAGCTAAAAGAG	4171	0.1693199273844435	No Hit
TTGTGTTTGACCCCCGAAACCAGACGAGCTACCTAAGAACAGCTAAAAGA	3929	0.1594960428418793	No Hit
GTGTTTGAGCCTGGTGATAGCTGGTTGTCCAAGATAGAATCTTAGTTCAA	3369	0.136763086875615	No Hit
TTGTGTTTGAGAGAGTAAAAAATTTAACACCCATAGTAGGCCTAAAAGCA	3182	0.12917190336545176	No Hit
TGTGTTTGAGAGAGTAAAAAATTTAACACCCATAGTAGGCCTAAAAGCAG	2966	0.12040347749274981	No Hit
TTGTGTTTGAGCCTGGTGATAGCTGGTTGTCCAAGATAGAATCTTAGTTC	2759	0.11200040269807711	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGACGG	20	0.002059928	71.37551	1
TCGGAAG	5385	0.0	67.30081	3
CGGAAGA	5420	0.0	67.04148	4
GATCGGA	5585	0.0	65.09209	1
ATCGGAA	5605	0.0	64.65921	2
GAAGAGC	5710	0.0	63.378014	6
CGCGCGG	25	0.004987092	57.10041	1
TCGACGG	25	0.0050225123	56.9984	2
GGAAGAG	6695	0.0	54.408222	5
CGACTCG	35	2.7644352E-4	54.381344	1
AGACGGC	45	1.5007638E-5	52.87075	1
TTGTGTT	26765	0.0	48.659267	1
GCCGTCT	4185	0.0	43.130333	50-51
ATGCCGT	4150	0.0	42.920486	48-49
TGCCGTC	4140	0.0	42.796	50-51
CGTATGC	4135	0.0	42.727673	46-47
TCTCGTA	4200	0.0	42.631386	42-43
TCGTATG	4200	0.0	42.631386	44-45
TATGCCG	4135	0.0	42.559265	48-49
CGTCTTC	4245	0.0	42.41011	52-53