C68Y0ACXX_l08n01_34298-1.341000000357c1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	C68Y0ACXX_l08n01_34298-1.341000000357c1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	5401618
Sequences flagged as poor quality	0
Sequence length	101
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGCTCATTATCTCGTAT	122168	2.261692700224266	TruSeq Adapter, Index 2 (97% over 37bp)
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17519	0.3243287474234572	No Hit
GTGTTTGACCCCCGAAACCAGACGAGCTACCTAAGAACAGCTAAAAGAGC	13454	0.24907351834209676	No Hit
TGTGTTTGACCCCCGAAACCAGACGAGCTACCTAAGAACAGCTAAAAGAG	12196	0.22578420021556506	No Hit
GTGTTTGAGCCTGGTGATAGCTGGTTGTCCAAGATAGAATCTTAGTTCAA	9281	0.17181888834049355	No Hit
TGTGTTTGAGCCTGGTGATAGCTGGTTGTCCAAGATAGAATCTTAGTTCA	8460	0.1566197387523516	No Hit
TTGTGTTTGACCCCCGAAACCAGACGAGCTACCTAAGAACAGCTAAAAGA	6039	0.11179983479024248	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGAAGA	18520	0.0	67.36747	4
TCGGAAG	18635	0.0	67.1557	3
GATCGGA	18850	0.0	66.49878	1
GAAGAGC	18925	0.0	65.87385	6
ATCGGAA	19275	0.0	64.95055	2
GGAAGAG	20360	0.0	61.557545	5
CGAGTGG	135	0.0	45.84413	1
GCCGTCT	14525	0.0	43.10159	50-51
CGTCTTC	14605	0.0	42.88414	52-53
ATGCCGT	14545	0.0	42.812733	48-49
CTGCTTG	14695	0.0	42.767754	58-59
TGCCGTC	14565	0.0	42.575565	50-51
TCGTATG	14705	0.0	42.554493	44-45
TATGCCG	14525	0.0	42.495613	48-49
TCTCGTA	14660	0.0	42.361134	42-43
CGTATGC	14595	0.0	42.338264	46-47
CGAGGCG	270	0.0	42.31766	1
CGCGTTG	45	9.636317E-4	42.21503	6
CTCGTAT	14620	0.0	42.087185	44-45
ATCTCGT	14800	0.0	41.719727	42-43