FastQCFastQC Report
Thu 15 Oct 2015
C68Y0ACXX_l07n02_50331580-1.342000000357a5.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC68Y0ACXX_l07n02_50331580-1.342000000357a5.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3113244
Sequences flagged as poor quality0
Sequence length101
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGGA17400.085.663432
GAGCGGC11900.073.75099
GATCGGG22500.068.1594241
AGAGCGG13900.064.504448
TCGGGAG19000.064.194343
CGGGAGA19000.061.6955154
TTGTGTT295900.058.9843031
GAGAGCG17050.058.712247
AAGCGGC4350.057.8001869
GATCCGG3300.057.5508881
TCGGGAA6600.055.3686643
TCGGAAA5550.053.8713464
GTTCGGA3500.052.8946382
TTCGGAG3950.046.858113
GGTTCGG5050.046.0691951
GAGCGTC36450.045.6827479
AGAGCGT37550.044.4708378
AAAGCGG6700.043.1914378
TTCGGAA3850.043.1444133
TCGGAGA5950.043.0712054
Produced by FastQC (version 0.11.2)