FastQCFastQC Report
Thu 15 Oct 2015
C68Y0ACXX_l07n02_35008-2.342000000358b0.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC68Y0ACXX_l07n02_35008-2.342000000358b0.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5866971
Sequences flagged as poor quality0
Sequence length101
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGGA45350.082.612732
GAGCGGC29300.079.992789
GATCGGG48200.078.9209061
AAGCGGC12450.071.644029
AGAGCGG34300.070.683538
TCGGGAG44350.068.730253
CGGGAGA45500.066.364174
GAGAGCG41300.064.2191247
TCGGAGA10850.059.5109864
GATCCGG8850.058.4911081
TTCGGAA8550.056.0869373
TCGGGAA17550.056.001513
GGTTCGG8750.055.9030881
AAAGCGG17900.054.3365828
GAGCGTC85800.054.2466859
GTTCGGA7750.052.6919172
AGAGCGT90150.052.1554158
GGATCGG15900.051.0746771
TCGGAAA17750.049.4836044
CCGGAGA10350.048.6243134
Produced by FastQC (version 0.11.2)