FastQCFastQC Report
Thu 15 Oct 2015
C68Y0ACXX_l07n02_34211-1.34200000035897.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC68Y0ACXX_l07n02_34211-1.34200000035897.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3852904
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGGA11300.060.5080072
GATCGGG13450.052.6076931
GAGCGGC8450.044.3579839
TCGGGAG14100.040.737943
GATCCGG3400.040.5046041
CGACGGG1357.2759576E-1238.694051
AGCGGCG5800.036.40268310-11
AGAGCGG12150.034.3652158
AAGCGGC2800.033.890149
TTGTGTT335250.033.216921
CGCCGTA11100.031.44117758-59
CGGGAGA19600.031.2419574
GTGTTTG730550.031.1690791
GTCGCCG11600.031.11232256-57
TGTTTGA744350.030.5106872
GTTTGAT180600.030.3333823
GCCGTAT12000.029.87446458-59
TCGCCGT10750.029.8175656-57
CGCGTAG404.5262798E-429.65348614-15
GGCGCCG5550.029.51908956-57
Produced by FastQC (version 0.11.2)