C68Y0ACXX_l07n01_34298-1.341000000357c1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	C68Y0ACXX_l07n01_34298-1.341000000357c1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	5319197
Sequences flagged as poor quality	0
Sequence length	101
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGCTCATTATCTCGTAT	122265	2.2985612302007237	TruSeq Adapter, Index 2 (97% over 37bp)
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15908	0.29906769762428426	No Hit
GTGTTTGACCCCCGAAACCAGACGAGCTACCTAAGAACAGCTAAAAGAGC	13204	0.24823295696700085	No Hit
TGTGTTTGACCCCCGAAACCAGACGAGCTACCTAAGAACAGCTAAAAGAG	11719	0.22031520923176937	No Hit
GTGTTTGAGCCTGGTGATAGCTGGTTGTCCAAGATAGAATCTTAGTTCAA	8952	0.16829607927662765	No Hit
TGTGTTTGAGCCTGGTGATAGCTGGTTGTCCAAGATAGAATCTTAGTTCA	8172	0.15363221177933437	No Hit
TTGTGTTTGACCCCCGAAACCAGACGAGCTACCTAAGAACAGCTAAAAGA	5921	0.11131379416855589	No Hit
GTGTTTGAGGGGGTCTTAGCTTTGGCTCTCCTTGCAAAGTTATTTCTAGT	5321	0.1000338960937149	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGAAGA	18540	0.0	66.947914	4
TCGGAAG	18575	0.0	66.20802	3
GAAGAGC	18905	0.0	65.693245	6
GATCGGA	18925	0.0	65.04344	1
ATCGGAA	19365	0.0	63.531574	2
GGAAGAG	20200	0.0	61.575768	5
CGCGTTG	40	7.5562257E-6	59.365715	6
AACGCCG	155	0.0	46.047123	1
GCCGTCT	14290	0.0	43.30987	50-51
CGTCTTC	14295	0.0	43.296757	52-53
AGTCGCC	55	4.9154467E-5	43.25639	1
ATGCCGT	14415	0.0	42.768147	48-49
TGCCGTC	14440	0.0	42.596832	50-51
TCGTATG	14510	0.0	42.552402	44-45
TATGCCG	14375	0.0	42.474144	48-49
CGTATGC	14465	0.0	42.27475	46-47
CTGCTTG	14640	0.0	42.21235	58-59
TCTCGTA	14545	0.0	42.172253	42-43
CTCGTAT	14505	0.0	42.010426	44-45
ATCTCGT	14580	0.0	41.826702	42-43