C68Y0ACXX_l06n02_52370180-2.342000000358cd.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	C68Y0ACXX_l06n02_52370180-2.342000000358cd.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	5192526
Sequences flagged as poor quality	0
Sequence length	101
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGGATAGGGTGTAGATCT	17239	0.3319964117656801	Illumina Single End PCR Primer 1 (97% over 34bp)
GTGTTTGAGAGAGTAAAAAATTTAACACCCATAGTAGGCCTAAAAGCAGC	9064	0.17455858670712482	No Hit
GTGTTTGACCCCCGAAACCAGACGAGCTACCTAAGAACAGCTAAAAGAGC	8002	0.15410611328667395	No Hit
TGTGTTTGAGAGAGTAAAAAATTTAACACCCATAGTAGGCCTAAAAGCAG	7789	0.15000406353285473	No Hit
TGTGTTTGACCCCCGAAACCAGACGAGCTACCTAAGAACAGCTAAAAGAG	6781	0.13059154638802	No Hit
TTGTGTTTGAGAGAGTAAAAAATTTAACACCCATAGTAGGCCTAAAAGCA	6575	0.1266243057810399	No Hit
TTGTGTTTGACCCCCGAAACCAGACGAGCTACCTAAGAACAGCTAAAAGA	5302	0.1021082995058667	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GAGCGGC	5785	88.85383	9
CGGGAGA	8075	87.219864	4
AGAGCGG	6110	86.453674	8
TCGGGAG	8600	85.31707	3
GAGAGCG	7830	83.19295	7
CGGAGAG	2810	80.84483	5
TCGGAGA	1775	80.69379	4
AAGCGGC	1660	79.62435	9
CGGAAAG	2910	79.04454	5
ATTCGGA	1295	78.74695	2
ATCCGGA	1320	78.3335	2
GAGCGTC	14680	78.29148	9
ATCGGGA	10810	78.18925	2
AGAGCGT	14825	78.10094	8
GTTCGGA	1010	77.95639	2
GATCGGG	11120	77.68276	1
AAGAGCG	14130	74.2638	7
CGGAAGA	14985	71.94062	4
TCGGAAG	15245	71.369064	3
TTCGGAG	1370	70.62422	3