C68Y0ACXX_l06n02_34298-1.342000000357ce.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	C68Y0ACXX_l06n02_34298-1.342000000357ce.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	5257116
Sequences flagged as poor quality	0
Sequence length	101
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTGTTTGACCCCCGAAACCAGACGAGCTACCTAAGAACAGCTAAAAGAGC	14260	0.271251385740775	No Hit
TGTGTTTGACCCCCGAAACCAGACGAGCTACCTAAGAACAGCTAAAAGAG	13092	0.24903388093395692	No Hit
GTGTTTGAGCCTGGTGATAGCTGGTTGTCCAAGATAGAATCTTAGTTCAA	9233	0.17562861462444426	No Hit
TGTGTTTGAGCCTGGTGATAGCTGGTTGTCCAAGATAGAATCTTAGTTCA	9089	0.17288947019620643	No Hit
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTCTTCGCCTGTGTAGATCT	8814	0.16765846521172445	Illumina Single End PCR Primer 1 (96% over 32bp)
TTGTGTTTGACCCCCGAAACCAGACGAGCTACCTAAGAACAGCTAAAAGA	6761	0.12860663527302804	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	6518	0.12398432905037667	No Hit
GTGTTTGAGGGGGTCTTAGCTTTGGCTCTCCTTGCAAAGTTATTTCTAGT	6040	0.11489189129553162	No Hit
TTGTGTTTGAGCCTGGTGATAGCTGGTTGTCCAAGATAGAATCTTAGTTC	5771	0.10977501732889287	No Hit
TGTGTTTGAGGGGGTCTTAGCTTTGGCTCTCCTTGCAAAGTTATTTCTAG	5723	0.10886196918614692	No Hit
TGTGTTTGACGGGTGTGCTCTTTTAGCTGTTCTTAGGTAGCTCGTCTGGT	5667	0.10779674635294331	No Hit
GTGTTTGACGGGTGTGCTCTTTTAGCTGTTCTTAGGTAGCTCGTCTGGTT	5493	0.10448694683548927	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GAGCGGC	1650	76.662796	9
CGGGAGA	2170	76.50377	4
AGAGCGG	1745	72.489174	8
GAGAGCG	2065	71.58003	7
CGGAAAG	975	69.56278	5
TCGGGAA	890	65.55568	3
AAGCGGC	780	64.382614	9
ATTCGGA	320	62.263252	2
GAACCGG	350	61.00479	1
ACCGGAA	435	59.974777	3
TCGGGAG	2750	59.508858	3
AAAGCGG	985	54.830975	8
TCGGAGA	465	54.062664	4
AAGCGTC	500	53.06099	9
CGGAGAG	1040	52.44572	5
TTCGGAG	345	52.246803	3
GATCCGG	530	51.029163	1
AACCGGA	415	50.29642	2
GGATCGG	795	49.53708	1
AGAGCGT	8385	45.200607	8