FastQCFastQC Report
Thu 15 Oct 2015
C68Y0ACXX_l05n02_52150223-1.3420000003573b.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC68Y0ACXX_l05n02_52150223-1.3420000003573b.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3219527
Sequences flagged as poor quality0
Sequence length101
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGGA25400.082.943352
GAGCGGC15800.077.7208259
GATCGGG27750.077.4654541
AGAGCGG18850.067.913158
GAGAGCG22450.067.5857857
GTTCGGA4100.067.1237952
TCGGGAG25250.066.3282243
CGGGAGA26350.065.715874
AAGCGGC7700.064.653699
GATCCGG5550.061.5619471
ATCCGGA5450.060.0737762
CGGAAAG13200.060.0206345
GGATCGG9300.057.659171
TCGGGAA11250.055.668113
AAAGCGG10000.055.473728
GGTTCGG5950.055.0306971
TTCGGAA5850.053.5270273
ATTCGGA5700.052.4442672
TCGGAAA11500.052.391874
TTCGGAG5050.051.672133
Produced by FastQC (version 0.11.2)