FastQCFastQC Report
Thu 15 Oct 2015
C68Y0ACXX_l05n02_50331580-1.342000000357a5.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC68Y0ACXX_l05n02_50331580-1.342000000357a5.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3136629
Sequences flagged as poor quality0
Sequence length101
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGGA17050.079.8797152
GAGCGGC10000.069.701599
GATCGGG21000.067.355511
AGAGCGG11550.064.454018
TCGGGAG19900.059.8434263
CGGGAGA19450.058.541874
GAGAGCG18100.057.3726277
TTGTGTT301200.057.3302541
GGATCGG7400.057.086631
AAGCGGC4600.056.6931049
GATCCGG3800.053.710721
TCGGAGA4950.053.6732334
TTCGGAG4450.051.1772583
GTTCGGA3700.046.172122
TCGGGAA6500.044.5258523
GAGCGTC33900.044.478779
AGCGGCG10450.043.55854410-11
GCGTCGG5300.043.38946510-11
AGAGCGT35250.042.506988
CCGGATC6850.042.28524860-61
Produced by FastQC (version 0.11.2)