C68Y0ACXX_l05n01_34298-1.341000000357c1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	C68Y0ACXX_l05n01_34298-1.341000000357c1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	5348509
Sequences flagged as poor quality	0
Sequence length	101
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGCTCATTATCTCGTAT	116628	2.180570323430324	TruSeq Adapter, Index 2 (97% over 37bp)
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16170	0.3023272467149256	No Hit
GTGTTTGACCCCCGAAACCAGACGAGCTACCTAAGAACAGCTAAAAGAGC	13173	0.24629293883585124	No Hit
TGTGTTTGACCCCCGAAACCAGACGAGCTACCTAAGAACAGCTAAAAGAG	12208	0.2282505273899698	No Hit
GTGTTTGAGCCTGGTGATAGCTGGTTGTCCAAGATAGAATCTTAGTTCAA	9107	0.17027175237061395	No Hit
TGTGTTTGAGCCTGGTGATAGCTGGTTGTCCAAGATAGAATCTTAGTTCA	8174	0.15282763850635758	No Hit
TTGTGTTTGACCCCCGAAACCAGACGAGCTACCTAAGAACAGCTAAAAGA	6050	0.11311563652599257	No Hit
GTGTTTGAGGGGGTCTTAGCTTTGGCTCTCCTTGCAAAGTTATTTCTAGT	5504	0.10290718403951457	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGAAGA	18695	0.0	66.819374	4
TCGGAAG	18795	0.0	66.716576	3
GAAGAGC	19070	0.0	65.51868	6
GATCGGA	19350	0.0	64.915886	1
ATCGGAA	19615	0.0	63.927498	2
GGAAGAG	20380	0.0	61.423733	5
TCGCCGG	100	0.0	52.247414	2
CGATCGC	40	5.345205E-4	47.580395	1
CACGCCG	105	2.0008883E-11	45.314663	1
CGAGTGG	170	0.0	44.78155	1
GCCGTCT	14510	0.0	42.99988	50-51
CGTCTTC	14465	0.0	42.98789	52-53
ATGCCGT	14570	0.0	42.587227	48-49
TGCCGTC	14555	0.0	42.57322	50-51
TATGCCG	14505	0.0	42.46701	48-49
CTGCTTG	14675	0.0	42.355556	58-59
TCGTATG	14635	0.0	42.3492	44-45
CGACGGG	225	0.0	42.293686	1
CGTATGC	14570	0.0	42.179573	46-47
TCTCGTA	14630	0.0	41.941658	42-43