FastQCFastQC Report
Thu 15 Oct 2015
C68Y0ACXX_l04n02_35010-1.342000000357e8.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC68Y0ACXX_l04n02_35010-1.342000000357e8.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6928491
Sequences flagged as poor quality0
Sequence length101
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGCGGC15350.052.8371289
AGAGCGG16400.052.060138
CGGGAGA19900.051.733054
GATCGGG29050.049.8239021
GAGAGCG21650.045.5736127
ATCGGGA31100.043.6338582
TTGTGTT551950.039.9450951
GGCGCCG13800.039.41787356-57
CGCGCAA853.6712845E-739.0807721
GGGCGCC20150.035.72032554-55
CGGAAAG10900.035.253155
CGCCGTA16600.035.1971258-59
TGTGTTT974550.035.1135981
AGCGGCG14350.034.70813410-11
TCGGGAG30750.034.563
CGCCGGA8550.034.4457558-59
TCGGGAA10150.034.1214643
TCGCCGT13800.033.909756-57
CCGGATC9150.033.21652660-61
GTCGCCG17700.033.1482456-57
Produced by FastQC (version 0.11.2)