FastQCFastQC Report
Thu 15 Oct 2015
C68Y0ACXX_l03n02_50331580-1.342000000357a5.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC68Y0ACXX_l03n02_50331580-1.342000000357a5.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3035834
Sequences flagged as poor quality0
Sequence length101
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGGA17050.081.5066452
GAGCGGC10600.080.0670249
AGAGCGG12350.068.72158
GATCGGG21000.067.312681
TCGGGAG19700.063.551093
CGGGAGA18600.062.7202074
GAGAGCG17350.060.3947687
GATCCGG3650.059.7812421
TTGTGTT294850.058.3507461
TCGGAGA4550.051.0704884
AAGCGGC3900.051.0612229
TTCGGAG3450.050.8590133
GTTCGGA2000.049.801122
CGCGTCA357.929884E-847.49900460-61
GAGCGTC37100.046.774999
CCGGAGA5300.046.527834
AGAGCGT38750.045.8845068
GGATCGG5100.045.574921
AAGCGTC2100.045.156189
AGCGGCG11050.043.7667610-11
Produced by FastQC (version 0.11.2)