FastQCFastQC Report
Thu 15 Oct 2015
C68Y0ACXX_l01n02_52150223-1.3420000003573b.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC68Y0ACXX_l01n02_52150223-1.3420000003573b.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3117415
Sequences flagged as poor quality0
Sequence length101
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGGA25250.080.569392
GAGCGGC15250.076.78619
GATCGGG27500.076.743811
AAGCGGC7500.069.532359
TCGGGAG25050.068.338693
AGAGCGG17850.067.72748
CGGGAGA26300.065.090654
GTTCGGA3800.064.892412
GATCCGG5050.064.799811
GAGAGCG24250.060.6094557
GGATCGG8000.058.6896131
TCGGAGA6300.057.205824
ATCCGGA5650.057.073522
CGACGCG250.005053186356.911141
AAAGCGG9950.056.700438
CCGGAGA6250.055.3872764
TCGGGAA10600.055.0258063
GGTTCGG5350.054.074451
TTCGGAG5350.054.0683673
CGGAAAG12750.053.55745
Produced by FastQC (version 0.11.2)