FastQCFastQC Report
Thu 15 Oct 2015
C68Y0ACXX_l01n02_50331580-1.342000000357a5.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC68Y0ACXX_l01n02_50331580-1.342000000357a5.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3032612
Sequences flagged as poor quality0
Sequence length101
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGGA14350.077.9855962
GAGCGGC10200.075.281769
AGAGCGG12400.063.4564328
GATCCGG3750.063.231881
GTTCGGA2800.060.9675562
AAGCGGC3450.060.45179
GATCGGG19650.058.405021
TCGGGAG17250.058.275593
TTGTGTT290800.057.469691
GAGAGCG16550.056.998827
CGGGAGA18800.055.993174
TTCGGAG3950.055.220543
TCGGAGA5950.051.003854
TCGGGAA4650.048.9472433
GGTTCGG4550.045.8604851
TCGGAAA6450.045.5797464
GAACCGG3150.045.1656271
GGATCGG7550.044.5973171
AAAGCGG5050.044.115968
AGCGGCG10800.042.13310-11
Produced by FastQC (version 0.11.2)