FastQCFastQC Report
Thu 15 Oct 2015
C68Y0ACXX_l01n02_35010-1.342000000357e8.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC68Y0ACXX_l01n02_35010-1.342000000357e8.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6731577
Sequences flagged as poor quality0
Sequence length101
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGCGGC13800.055.657169
AGAGCGG15450.052.78238
CGGGAGA20050.051.0867844
GAGAGCG19050.047.7881777
GATCGGG26250.046.975151
ATCGGGA28150.039.75692
TTGTGTT537300.039.3502431
AAGCGGC6650.035.647869
GGCGCCG12850.035.4902856-57
GATCCGG5500.035.3545531
TCGGGAG29000.035.1568263
CGCCGGA7300.035.13796258-59
TGTGTTT952550.035.0516971
AGCGGCG13350.034.62648810-11
GGTCCGG3900.034.0500371
ATTCGGA6500.033.5601122
CGCCGTA12050.033.1129558-59
GGTTCGG6100.032.6545451
GGGCGCC20600.031.70964454-55
CGCGCGG600.00398223731.6178911
Produced by FastQC (version 0.11.2)