FastQCFastQC Report
Thu 15 Oct 2015
C68Y0ACXX_l01n02_35008-2.342000000358b0.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC68Y0ACXX_l01n02_35008-2.342000000358b0.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5697607
Sequences flagged as poor quality0
Sequence length101
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGCGGC25800.081.420919
ATCGGGA37050.081.031772
GATCGGG41300.074.64871
AGAGCGG33800.066.499358
AAGCGGC12500.064.8691259
TCGGGAG39500.064.477683
GAGAGCG38200.062.4407467
CGGGAGA41050.061.6964654
GGATCGG15250.061.271051
GATCCGG9500.060.411651
GTTCGGA6350.056.0179632
TCGGAGA12000.054.93714
TCGGGAA15250.054.1142433
CCGGAGA10150.053.2685624
AAAGCGG16850.052.9070668
GGTTCGG8300.051.43081
CCGGAAA10050.050.0232544
TTCGGAG8550.049.923913
GGTCCGG6100.049.7632871
TCGGAAA18700.048.4422074
Produced by FastQC (version 0.11.2)