FastQCFastQC Report
Thu 15 Oct 2015
C68Y0ACXX_l01n02_30484-1.34200000035803.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC68Y0ACXX_l01n02_30484-1.34200000035803.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8284331
Sequences flagged as poor quality0
Sequence length101
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGCGGC43250.083.431699
CGGGAGA60350.079.374144
ATTCGGA10900.076.149582
AGAGCGG49700.075.46858
TTCGGAG9700.074.809133
CGGAAAG24800.070.9507755
AAGCGGC15350.070.121299
GATCGGG82650.069.676181
ATCGGGA79750.068.692182
GAGAGCG65000.067.99097
GATCCGG13400.065.136071
TCGGGAA19700.062.1138463
GTTCGGA12150.062.0692942
GAACCGG6900.061.1856271
GGACCGG9950.059.5930251
TCGGAAA22150.059.097664
AAAGCGG20400.058.3430568
ACCGGAA7550.056.5367053
AAGGGGC48200.055.1884659
AACCGGA7300.054.577342
Produced by FastQC (version 0.11.2)