C6001ACXX l05n01 ah8115a-062415.3410000000d6be.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	C6001ACXX l05n01 ah8115a-062415.3410000000d6be.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	293444
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACAGTGATCTCGTATGCC	2748	0.9364648791592264	TruSeq Adapter, Index 5 (100% over 51bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATGCC	496	0.16902713976090838	TruSeq Adapter, Index 12 (100% over 51bp)
GCTTTCGCATGAAGTACCTCCCAACTACTTTTCCTCACACTTGTACTCCAT	481	0.16391543190523575	No Hit
CATCTGCGTTATCGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCT	457	0.15573669933615952	No Hit
ACTTCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAA	375	0.1277926963918158	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATGCC	368	0.12540723272583526	TruSeq Adapter, Index 2 (100% over 51bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATGTCAGAATCTCGTATG	317	0.10802742601654831	TruSeq Adapter, Index 15 (97% over 40bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCAGGCG	40	6.7830115E-9	45.001534	35
GAGCCTC	20	7.023509E-4	45.001534	4
AGCACAC	520	0.0	43.270706	10
ACACGTC	520	0.0	43.263332	13
GATCGGA	530	0.0	42.908077	1
GCACACG	530	0.0	42.447044	11
CACACGT	530	0.0	42.447044	12
CACGTCT	530	0.0	42.02257	14
ACGTCTG	540	0.0	41.244377	15
GAGCACA	555	0.0	40.947342	9
CCCAGGC	55	6.002665E-11	40.910484	34
GAACTCC	540	0.0	40.834724	21
CGTCTGA	550	0.0	40.49448	16
CACAGTG	295	0.0	40.418217	33
ATCGGAA	565	0.0	40.215755	2
TGAACTC	550	0.0	40.092278	20
TCGGAAG	570	0.0	39.862984	3
GTATGCC	455	0.0	39.555046	45
CCGCCCC	40	3.445566E-7	39.376343	28
CTCCAGT	555	0.0	39.325665	24