C6001ACXX l05n01 ah8104a-062415.3410000000d7bd.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	C6001ACXX l05n01 ah8104a-062415.3410000000d7bd.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	342615
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACAGTGATCTCGTATGCC	9852	2.875530843658334	TruSeq Adapter, Index 5 (100% over 51bp)
TATTCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATC	4876	1.423171781737519	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATGCC	3983	1.1625293697006844	TruSeq Adapter, Index 2 (100% over 51bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATGCC	1230	0.3590035462545423	TruSeq Adapter, Index 12 (100% over 51bp)
TCTTCAGTTTAAAGATTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATC	1022	0.2982940034732864	No Hit
ACTTCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAA	417	0.12171095836434481	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATGCC	349	0.10186360783970345	TruSeq Adapter, Index 6 (100% over 51bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CCTCGGG	425	44.9981	15
TCGGGGA	595	44.62648	17
GATCGGA	1890	44.084362	1
CTCGGGG	440	43.97542	16
ACACGTC	1895	43.929543	13
GCACACG	1895	43.929543	11
CACGTCT	1890	43.92672	14
CACACGT	1905	43.81705	12
GAACTCC	1880	43.807735	21
CGTCTGA	1885	43.80452	16
ACGTCTG	1900	43.695526	15
GTATGCC	1790	43.615482	45
CAGGCGG	615	43.53475	36
CCAGGCG	610	43.522755	35
GTCTCCC	610	43.522755	42
TCGGAAG	1930	43.482624	3
TCCTCGG	445	43.48131	14
CAGTCAC	1890	43.331505	27
CGTATGC	1805	43.253025	44
ATCGGAA	1925	43.244926	2