C5WCJACXX l03n01 ap2_pchx_pn_pd_11.3410000000c49a.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	C5WCJACXX l03n01 ap2_pchx_pn_pd_11.3410000000c49a.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	15195738
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGGCTACATCTCGTATGCC	46156	0.3037430626929735	TruSeq Adapter, Index 11 (100% over 51bp)
GGGATCTGTACGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGGACG	40801	0.268502918384089	No Hit
GTCGGGATCTGTACGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGG	32938	0.21675814626443282	No Hit
GCTGACTCTAGCAGATCTATCGATTCTAGCATGACTGGTGGACAGCAAATG	32193	0.21185545578635273	No Hit
CGGGATCTGTACGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGGAC	19762	0.1300496231245893	No Hit
ATCGATTCTAGCATGACTGGTGGACAGCAAATGGGTCGGGATCTGTACGAC	15546	0.1023050015734675	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCACACG	6210	36.339363	11
CGTATGC	6195	35.485527	44
GTATGCC	6210	35.2176	45
AGCACAC	6740	33.71549	10
ACGGCTA	6570	33.457783	32
ACGTCTG	6820	33.121296	15
AGTCACG	6790	32.540268	28
CACACGT	6960	32.358192	12
ACACGTC	7000	32.237465	13
TCGTATG	6855	32.233093	43
CACGGCT	6925	31.775108	31
GCTACAT	6925	31.742619	35
CACGTCT	7185	31.40741	14
CTACATC	7145	30.51262	36
CGTCTGA	7405	30.50469	16
GGCTACA	7195	30.426361	34
CAGTCAC	7355	30.22412	27
CTCGTAT	7290	30.031935	42
GAGCACA	7605	30.02858	9
AGAGCAC	7700	29.716536	8