C5WCJACXX l03n01 ap2_mchx_pn_pd_06.3410000000c2df.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	C5WCJACXX l03n01 ap2_mchx_pn_pd_06.3410000000c2df.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	17740954
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATGCC	68699	0.38723396723761305	TruSeq Adapter, Index 6 (100% over 51bp)
GGGATCTGTACGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGGACG	52057	0.2934284142780597	No Hit
GTCGGGATCTGTACGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGG	41715	0.23513391669918088	No Hit
GCTGACTCTAGCAGATCTATCGATTCTAGCATGACTGGTGGACAGCAAATG	40025	0.2256079351764285	No Hit
CGGGATCTGTACGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGGAC	21458	0.12095178196166903	No Hit
ATCGATTCTAGCATGACTGGTGGACAGCAAATGGGTCGGGATCTGTACGAC	19719	0.1111496033415114	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCACACG	8200	38.55034	11
CGTATGC	8330	37.27641	44
CACACGT	8655	36.627182	12
GTATGCC	8580	36.37271	45
ACACGTC	8800	35.946968	13
ACGTCTG	8850	35.845566	15
CACGCCA	8720	35.580616	31
GTCACGC	8900	34.96351	29
AGTCACG	8950	34.918922	28
TCACGCC	8895	34.855312	30
TCGTATG	8970	34.79237	43
CACGTCT	9175	34.6494	14
CGCCAAT	8955	34.621777	33
AGCACAC	9295	34.299374	10
TATCTCG	9240	33.678112	39
CTCGTAT	9455	32.888683	42
ACGCCAA	9580	32.550934	32
GCCAATA	9785	31.777	34
CGTCTGA	9990	31.73256	16
TCTCGTA	9875	31.489874	41