C5WCJACXX l03n01 ap2_mchx_pn_pd_05.3410000000c272.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	C5WCJACXX l03n01 ap2_mchx_pn_pd_05.3410000000c272.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	16685985
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGATCTGTACGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGGACG	48516	0.290758981264816	No Hit
GTCGGGATCTGTACGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGG	40615	0.24340786594258595	No Hit
GCTGACTCTAGCAGATCTATCGATTCTAGCATGACTGGTGGACAGCAAATG	37618	0.22544668474770896	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACAGTGATCTCGTATGCC	36608	0.2193937007614474	TruSeq Adapter, Index 5 (100% over 51bp)
CGGGATCTGTACGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGGAC	21358	0.12799963562235012	No Hit
ATCGATTCTAGCATGACTGGTGGACAGCAAATGGGTCGGGATCTGTACGAC	17290	0.10361989418065522	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCACACG	5010	33.68137	11
CGTATGC	5025	32.91217	44
ACGTCTG	5355	31.552773	15
ACACGTC	5330	31.531923	13
GTATGCC	5305	31.343676	45
CACACGT	5435	31.005726	12
AGCACAC	5585	30.294294	10
TCGTATG	5545	29.988043	43
CACGTCT	5715	29.486462	14
CTCGTAT	5840	28.434706	42
CACAGTG	6075	27.369097	33
ACACAGT	6085	27.17622	32
GTCACAC	6160	26.773333	29
CACACAG	6315	26.364565	31
CAGTCAC	6395	26.141161	27
TCTCGTA	6435	25.770578	41
CGTCTGA	6760	25.094683	16
GAGCACA	6905	24.405308	9
AGAGCAC	7185	23.830002	8
CTGAACT	7220	23.308882	19