C5WCJACXX l03n01 ap2_mchx_pn_pd_04.3410000000c208.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	C5WCJACXX l03n01 ap2_mchx_pn_pd_04.3410000000c208.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	19351827
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGACCAATCTCGTATGCC	96785	0.5001336566309734	TruSeq Adapter, Index 4 (100% over 51bp)
GGGATCTGTACGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGGACG	43996	0.2273480431589224	No Hit
GTCGGGATCTGTACGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGG	38112	0.19694264526031574	No Hit
GCTGACTCTAGCAGATCTATCGATTCTAGCATGACTGGTGGACAGCAAATG	34629	0.1789443446347469	No Hit
GCCAAATGTTTGAACGATCGGGAATTGGATCCGGTACCGAGCTCGAATTCT	22288	0.11517258809723753	No Hit
CGGGATCTGTACGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGGAC	19361	0.10004740120919849	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCACACG	12040	39.411144	11
CGTATGC	11875	39.279613	44
GTATGCC	12035	38.850082	45
CACACGT	12435	38.285305	12
ACGTCTG	12480	38.074947	15
ACACGTC	12500	38.014027	13
ACTGACC	12420	37.697903	32
TCGTATG	12680	36.87464	43
CTCGTAT	12655	36.751904	42
CACGTCT	12990	36.718647	14
AGCACAC	13210	36.005688	10
CACTGAC	13270	35.41883	31
TCTCGTA	13380	34.87821	41
CGTCTGA	13775	34.544487	16
AGTCACT	13800	34.07564	28
CTGAACT	14060	33.796253	19
CAGTCAC	13930	33.709175	27
GAGCACA	14540	32.897873	9
CTGACCA	14395	32.619514	33
AGAGCAC	14720	32.5873	8