C5WCJACXX l02n01 ap2_mchx_mn_pd_16.3410000000c222.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	C5WCJACXX l02n01 ap2_mchx_mn_pd_16.3410000000c222.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	12502400
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGATCTGTACGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGGACG	35698	0.28552917839774766	No Hit
GTCGGGATCTGTACGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGG	27131	0.2170063347837215	No Hit
GCTGACTCTAGCAGATCTATCGATTCTAGCATGACTGGTGGACAGCAAATG	25877	0.20697626055797289	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGACCAATCTCGTATGCC	25101	0.2007694522651651	TruSeq Adapter, Index 4 (100% over 51bp)
CGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGGACGTCATCAAGGA	19114	0.1528826465318659	No Hit
CGGGATCTGTACGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGGAC	16148	0.1291592014333248	No Hit
CTTGGCGGTCTGGGTGCCCTCGTAGGGGCGGCCCTCGCCCTCGCCCTCGAT	13977	0.11179453544919375	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCACACG	3535	35.26052	11
CGTATGC	3755	32.118958	44
GTATGCC	3830	31.665108	45
CACACGT	4035	31.114105	12
ACGTCTG	4000	31.104864	15
ACACGTC	4125	30.216957	13
ACTGACC	4125	29.508013	32
TCGTATG	4145	29.259766	43
AGCACAC	4360	29.001467	10
CACGTCT	4435	28.053991	14
CTCGTAT	4390	27.932562	42
CACTGAC	4465	27.412212	31
CGTCTGA	4860	25.646904	16
AGTCACT	4850	25.375362	28
CAGTCAC	4875	25.245232	27
TCTCGTA	4905	24.953915	41
CTGAACT	5145	24.05131	19
GAGCACA	5335	23.912159	9
GTCACTG	5315	23.197647	29
CTGACCA	5375	22.896837	33