C5WCJACXX l02n01 ap2_mchx_mn_md_14.3410000000c123.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	C5WCJACXX l02n01 ap2_mchx_mn_md_14.3410000000c123.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	14167350
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATGCC	41235	0.2910565490370465	TruSeq Adapter, Index 2 (100% over 51bp)
GGGATCTGTACGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGGACG	31288	0.22084581802524816	No Hit
GTCGGGATCTGTACGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGG	24355	0.17190935496052545	No Hit
GCTGACTCTAGCAGATCTATCGATTCTAGCATGACTGGTGGACAGCAAATG	22170	0.15648656947135492	No Hit
CGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGGACGTCATCAAGGA	16811	0.11866015874528404	No Hit
CGGGATCTGTACGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGGAC	14246	0.10055514969277952	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCACACG	5460	37.045406	11
CGTATGC	5490	35.861805	44
GTATGCC	5730	34.51657	45
ACACGTC	5905	34.177467	13
ACGTCTG	5945	34.136738	15
CACACGT	5990	33.730038	12
TCGTATG	6115	32.49082	43
AGCACAC	6275	32.3415	10
CACGTCT	6255	32.336884	14
CTCGTAT	6290	31.58519	42
TATCTCG	6330	31.20788	39
CGATGTA	6455	30.777283	34
CCGATGT	6855	28.915735	33
AGTCACC	6980	28.752474	28
TCTCGTA	6960	28.609316	41
CAGTCAC	7075	28.08019	27
CGTCTGA	7270	27.853222	16
GAGCACA	7370	27.841633	9
GATGTAT	7390	27.096384	35
ATGTATC	7440	26.853806	36