SE370_GTCCGC_L006_R1_001.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SE370_GTCCGC_L006_R1_001.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	16274774
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCCGCACATCTCGTATG	821823	5.049673808066397	TruSeq Adapter, Index 18 (97% over 40bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCACACG	98920	43.748806	11
ACACGTC	99130	43.621418	13
CACACGT	99270	43.590027	12
TCGTATG	98670	43.468605	45
CGTCCGC	96665	43.376842	33
ACGTCCG	97225	43.3649	32
GATCGGA	99035	43.34525	1
GTCCGCA	96640	43.325592	34
AGTCACG	99105	43.315285	28
TCCGCAC	96360	43.227306	35
CACGTCT	99825	43.225323	14
CACGTCC	97505	43.221775	31
CGCACAT	97295	43.220325	37
GTCACGT	98815	43.20787	29
CGTCTGA	100080	43.198223	16
ACGTCTG	100215	43.149143	15
AGCACAC	100595	43.118748	10
TCACGTC	98635	43.068493	30
CTCGTAT	99175	42.972645	44
CCGCACA	97290	42.96159	36