SE358_CGATGT_L005_R1_001.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SE358_CGATGT_L005_R1_001.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	11501398
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATGCC	490482	4.264542449535265	TruSeq Adapter, Index 2 (100% over 51bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ACACGTC	55185	43.485157	13
CACACGT	55235	43.48245	12
GTATGCC	54435	43.43312	45
CACGTCT	55320	43.36277	14
GCACACG	55445	43.342106	11
ACGTCTG	55425	43.309036	15
TCGTATG	54935	43.123848	43
CTCGTAT	54860	43.064735	42
CGTATGC	54905	43.036724	44
CGTCTGA	55790	42.976555	16
AGCACAC	56210	42.772057	10
AGTCACC	55595	42.74571	28
CGATGTA	55345	42.651093	34
TCGGAAG	57025	42.61518	3
GATCGGA	56875	42.61012	1
CAGTCAC	55960	42.486633	27
GAACTCC	56160	42.443447	21
TCTCGTA	55700	42.426117	41
CCGATGT	55780	42.383583	33
CCAGTCA	56015	42.377518	26