SE336_GTCCGC_L004_R1_001.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SE336_GTCCGC_L004_R1_001.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3905060
Sequences flagged as poor quality	0
Sequence length	51
%GC	36

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCCGCACATCTCGTATG	121104	3.101207151746708	TruSeq Adapter, Index 18 (97% over 40bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCACACG	15245	43.47033	11
CGTCCGC	14360	43.379326	33
ACGTCCG	14515	43.316437	32
GTCCGCA	14365	43.273556	34
AGTCACG	15030	43.27009	28
CACGTCC	14555	43.152668	31
GATCGGA	15435	43.12956	1
ACACGTC	15305	43.123535	13
CGTCTGA	15320	43.10847	16
CACACGT	15390	43.03153	12
TCACGTC	14775	42.999725	30
AGCACAC	15465	42.92466	10
ACGTCTG	15425	42.87391	15
TCCGCAC	14480	42.850513	35
GTCACGT	14900	42.8326	29
CACGTCT	15405	42.829006	14
CGCACAT	14715	42.69492	37
GAACTCC	15345	42.661484	21
ACTCCAG	15255	42.62151	23
CAGTCAC	15330	42.62009	27