SE334_CCGTCC_L004_R1_001.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SE334_CCGTCC_L004_R1_001.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2469861
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCGTCCCGATCTCGTATG	146079	5.914462392822916	TruSeq Adapter, Index 16 (97% over 40bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCACACG	17465	44.064163	11
ACGTCTG	17450	44.049583	15
CACGTCT	17435	44.036762	14
ACACGTC	17470	44.01292	13
CCCGTCC	16540	43.976593	33
CCGTCCC	16385	43.953075	34
CGTCCCG	16325	43.921616	35
CACCCGT	16750	43.91882	31
TCACCCG	16930	43.875443	30
AGCACAC	17575	43.852367	10
CACACGT	17525	43.849117	12
GTCCCGA	16020	43.84025	36
ACCCGTC	16785	43.81383	32
GTCACCC	17125	43.79189	29
GATCGGA	17715	43.70597	1
CCCGATC	16125	43.680374	38
AGTCACC	17230	43.639015	28
CAGTCAC	17365	43.58038	27
CGTCTGA	17650	43.549553	16
TCGTATG	16575	43.42169	45