SE331_CTTGTA_L004_R1_001.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SE331_CTTGTA_L004_R1_001.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	7691611
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATGCC	282489	3.672689635500287	TruSeq Adapter, Index 12 (100% over 51bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ACACGTC	32930	43.17339	13
ACGTCTG	32990	42.985207	15
CACACGT	33160	42.93499	12
CACGTCT	33095	42.924152	14
GCACACG	33245	42.919945	11
AGTCACC	32280	42.871983	28
GTATGCC	32675	42.735046	45
GTCACCT	32200	42.707893	29
CGTATGC	32740	42.626255	44
CCTTGTA	31875	42.616344	33
CGTCTGA	33340	42.55392	16
CTCGTAT	32740	42.52259	42
CACCTTG	32230	42.487984	31
ACCTTGT	32140	42.41791	32
TCGTATG	32990	42.378273	43
GAACTCC	33385	42.29964	21
TCCAGTC	33145	42.263885	25
CAGTCAC	33120	42.261818	27
TGTAATC	32165	42.233345	36
CCAGTCA	33205	42.17396	26