SE330_TAGCTT_L004_R1_001.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SE330_TAGCTT_L004_R1_001.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	9011164
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTAGCTTATCTCGTATGCC	581054	6.4481569750589385	TruSeq Adapter, Index 10 (100% over 51bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ACTAGCT	63620	43.727783	32
CACTAGC	63735	43.66823	31
ACACGTC	66230	43.643192	13
TCACTAG	64235	43.607258	30
CACACGT	66330	43.5568	12
CACGTCT	66340	43.534004	14
GTATGCC	65590	43.501328	45
TAGCTTA	63690	43.448948	34
GCACACG	66735	43.305946	11
GAACTCC	66340	43.283524	21
CTAGCTT	64135	43.266056	33
CTCGTAT	65835	43.254753	42
ACGTCTG	66935	43.153507	15
TCGTATG	66270	43.127525	43
TCTCGTA	66070	43.088287	41
CGTATGC	66385	42.971443	44
TGAACTC	67035	42.951283	20
AGCACAC	67475	42.94413	10
CGTCTGA	67295	42.875854	16
TCTGAAC	67300	42.869324	18