MK241_GAGTGG_L002_R1_001.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	MK241_GAGTGG_L002_R1_001.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	16246043
Sequences flagged as poor quality	0
Sequence length	51
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGAGTGGATCTCGTATGCC	744619	4.5833868591878035	TruSeq Adapter, Index 7 (97% over 36bp)
GATTGGAAGAGCACACGTCTGAACTCCAGTCACGAGTGGATCTCGTATGCC	23800	0.14649721165947918	TruSeq Adapter, Index 9 (97% over 35bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CACACGT	94470	43.552216	12
GCACACG	95260	43.205204	11
CGTCTGA	95365	43.150555	16
ACGTCTG	95500	43.101337	15
CACGTCT	95765	42.970318	14
AGCACAC	96080	42.916073	10
GTCTGAA	96015	42.846855	17
CAGTCAC	94675	42.813953	27
GTATGCC	91885	42.76357	45
CGTATGC	92380	42.56249	44
TCTGAAC	96570	42.537838	18
CTGAACT	96655	42.46565	19
ACACGTC	97180	42.35622	13
ACGAGTG	91760	42.322502	32
GTCACGA	94725	42.27604	29
CTCGTAT	93200	42.25635	42
CACGAGT	92220	42.22503	31
GATCGGA	90500	42.131393	1
TCGTATG	93600	42.12769	43
TCACGAG	94865	42.116016	30