MK238_GTGGCC_L002_R1_001.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	MK238_GTGGCC_L002_R1_001.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	27301851
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGGCCATCTCGTATGCC	1633297	5.9823672761235125	TruSeq Adapter, Index 20 (98% over 51bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCACACG	206575	43.886204	11
CACACGT	206385	43.883007	12
CGTCTGA	206645	43.72578	16
AGCACAC	208530	43.54273	10
ACGTCTG	207830	43.524094	15
CGTGGCC	193005	43.497993	33
CACGTCT	208165	43.47134	14
GTCTGAA	208495	43.30111	17
GTATGCC	198695	43.19429	45
CTGAACT	208945	43.146877	19
GATCGGA	194360	43.13065	1
TCTGAAC	209515	43.055946	18
CAGTCAC	207350	43.00823	27
GTGGCCA	194290	43.000446	34
ACACGTC	211205	42.872025	13
TCACGTG	201575	42.82609	30
CGTATGC	200610	42.803535	44
GTCACGT	203005	42.782818	29
GCCATCT	197170	42.643368	37
AGAGCAC	213525	42.61384	8