MK232_TAGCTT_L002_R1_001.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	MK232_TAGCTT_L002_R1_001.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	22937231
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTAGCTTATCTCGTATGCC	1146953	5.000398696773818	TruSeq Adapter, Index 10 (100% over 51bp)
GTGATTTAGCGCCCCGACATTGAACCAGAGTGATCTGGCGTTGGCAAGCGT	44890	0.19570801724061634	No Hit
GTCAAACTCCCCGCTTGACACTGTCTTCGAGGAGAGTCACGGTGCCATAAA	32433	0.1413989334632415	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CACACGT	140265	44.22625	12
TAGCTTA	134635	44.028915	34
GCACACG	141095	43.982033	11
ACTAGCT	135875	43.91176	32
CTAGCTT	135930	43.77675	33
CGTCTGA	141255	43.74747	16
TCACTAG	137980	43.64948	30
GTCACTA	138545	43.629574	29
CACTAGC	137030	43.571983	31
CTTATCT	136550	43.53552	37
CTGAACT	141890	43.533043	19
TATCTCG	138310	43.465286	39
GTCTGAA	142285	43.463985	17
TCTGAAC	142350	43.42685	18
AGTCACT	140095	43.404297	28
GTATGCC	139105	43.3545	45
AGCTTAT	136910	43.282322	35
ACGTCTG	143125	43.227757	15
CACGTCT	143430	43.195435	14
TTATCTC	139255	43.114822	38