MK231_GATCAG_L002_R1_001.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	MK231_GATCAG_L002_R1_001.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	9917395
Sequences flagged as poor quality	0
Sequence length	51
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGATCAGATCTCGTATGCC	484411	4.884458065852979	TruSeq Adapter, Index 9 (100% over 51bp)
GCAAGTGATTTAGCGCCCCGACATTGAACCAGAGTGATCTGGCGTTGGCAA	15153	0.15279213946807604	No Hit
GTACGATTGAGTGCAAATTAATAGCCTCCCTTGGTGTTTTAAGGGCCGTTC	13545	0.13657820425625883	No Hit
GTGATTTAGCGCCCCGACATTGAACCAGAGTGATCTGGCGTTGGCAAGCGT	11190	0.11283204914193698	No Hit
GCGTTCAGTTATAATCTCTCAAATGGTAGCTTCAGACCATTGATCTGTCGA	11165	0.1125799668158826	No Hit

Adapter graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CACACGT	60130	44.24087	12
CGTCTGA	60635	43.77617	16
GCACACG	61015	43.67292	11
CACGTCT	60955	43.583263	14
GTCTGAA	60950	43.546234	17
ACGTCTG	61165	43.42995	15
GTATGCC	59045	43.408016	45
TCTGAAC	61020	43.378525	18
CTGAACT	61170	43.239925	19
ACACGTC	61565	43.202366	13
GATCGGA	57615	43.19236	1
AGCACAC	61800	43.17642	10
GAGCACA	62155	43.031372	9
TCAGATC	57805	42.819946	36
GATCAGA	57930	42.786247	34
CTCGTAT	59725	42.763363	42
ATCAGAT	57910	42.687912	35
CGGAAGA	59630	42.66643	4
ATCGGAA	58580	42.663757	2
CAGATCT	58290	42.56811	37