MK228_GCCAAT_L003_R1_001.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	MK228_GCCAAT_L003_R1_001.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	23562881
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATGCC	216238	0.9177061158183502	TruSeq Adapter, Index 6 (100% over 51bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TCACGCC	28280	42.012222	30
CACGCCA	28850	41.16028	31
GTCACGC	29150	40.9334	29
ACGCCAA	29425	40.56468	32
GTATGCC	29825	40.172237	45
TATCTCG	30235	39.82718	39
ACGTCTG	30765	39.77493	15
CACACGT	31495	39.12466	12
GCCAATA	30440	39.11049	34
CGTCTGA	31570	38.85334	16
CGCCAAT	31120	38.31228	33
CGTATGC	31415	38.20526	44
CACGTCT	32080	38.13749	14
GCACACG	32630	37.873894	11
CTCGTAT	32220	37.430584	42
CAGTCAC	32325	37.262722	27
GTCTGAA	32970	37.251274	17
TCGTATG	32705	36.993427	43
ATATCTC	33035	36.403793	38
CTGAACT	33600	36.366596	19