FastQCFastQC Report
Wed 4 Feb 2015
foxfcamras12hpf1_GGACCC_L001_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filenamefoxfcamras12hpf1_GGACCC_L001_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31451606
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTGTTTG336650.014.1465713
TTGTGTT340750.014.0210671
TGTGTTT345250.013.7233632
TGTTTGA462700.010.486231
CTACCCG30750.010.24226516
GAGGCTA32550.09.74487712
AGGCTAC34100.09.36803313
GCTACCC34850.09.36005315
TTTGTGT205400.08.7186352
TTTGAGG113050.07.99952943
TGACGGG61950.07.9163228
GACGGGC49550.07.89975939
ACGGGCG50150.07.536099410
CTAAGCG43400.07.363103441
GTTTGAG321000.07.20483352
TTGACGG75600.07.0821117
TACTAAG47050.06.886821339
TTTGAGC81050.06.68918133
TTTGAGT78800.06.65179163
TAAGCGG47450.06.640556342
Produced by FastQC (version 0.11.2)