bgm4_GCCAAT_L002_R1_001.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	bgm4_GCCAAT_L002_R1_001.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	29183423
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATGCC	851058	2.9162377559342505	TruSeq Adapter, Index 6 (100% over 51bp)
ACTTCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAA	340529	1.1668576369536912	No Hit
TATTCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATC	260111	0.8912970901322987	No Hit
TCTTCAGTTTAAAGATTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATC	58618	0.20086060500853517	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	94445	44.211708	1
ATCGGAA	94650	44.184914	2
TCGGAAG	95255	43.781406	3
CGTCTGA	94115	43.635372	16
ACGTCTG	94325	43.590626	15
ACACGTC	94580	43.57777	13
CGGAAGA	95515	43.527615	4
TATTCGT	27520	43.330036	1
TAAGCCG	36835	43.275536	16
CTCGTAT	93535	43.17944	42
CGCCAAT	93450	43.165752	33
TCTCGTA	93625	43.145145	41
AGCCGAT	36950	43.111588	18
GTCACGC	93935	43.009945	29
TATCTCG	94055	43.00052	39
TCGTATG	94045	42.99074	43
ACGCCAA	93990	42.98717	32
AGTCACG	94240	42.93043	28
CCGATGA	37105	42.92771	20
CGTATGC	94175	42.895557	44